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cogstack-nlp
Home
Architecture
Tutorials
Tutorials
Introductory Tutorials
Introductory Tutorials
Basic
Basic
1. Build a Concept Database and a Vocabulary
2. Unsupervised training on model
3. Supervised training on model
4. Evaluating performance on dataset
MetaCAT
MetaCAT
1. Add a MetaCat to a Model
RelCAT
RelCAT
1. Supervised Training Relation Extraction
2. Infering relations from annotations with Relation toolkit
Advanced Tutorials
Advanced Tutorials
1. Creating and using a custom tokenizer
2. Create and use component
Custom Components
Custom Components
1. Create Modelpack with 2step linker
Migration
Migration
1. Migrate v1 model to v2
Upgrading
Upgrading
Migration guide (v2)
Breaking changes
API Reference
API Reference
medcat
medcat
cat
cdb
cdb
cdb
concepts
components
components
addons
addons
addons
meta_cat
meta_cat
data_utils
mctokenizers
mctokenizers
bert_tokenizer
bpe_tokenizer
tokenizers
meta_cat
ml_utils
models
relation_extraction
relation_extraction
base_component
bert
bert
config
model
tokenizer
config
llama
llama
config
model
tokenizer
ml_utils
models
modernbert
modernbert
config
model
tokenizer
pad_seq
rel_cat
rel_dataset
tokenizer
linking
linking
context_based_linker
no_action_linker
only_primary_name_linker
two_step_context_based_linker
vector_context_model
ner
ner
dict_based_ner
trf
trf
deid
helpers
model
tokenizer
transformers_ner
vocab_based_annotator
vocab_based_ner
normalizing
normalizing
normalizer
tagging
tagging
tagger
types
config
config
config
config_meta_cat
config_rel_cat
config_transformers_ner
data
data
entities
mctexport
model_card
deid
model_creation
model_creation
cdb_maker
preprocess_snomed
preprocess_umls
pipeline
pipeline
pipeline
speed_utils
plugins
plugins
catalog
cli
data
downloadable
installer
loader
registry
preprocessors
preprocessors
cleaners
stats
stats
kfold
stats
storage
storage
jsonserialiser
mp_ents_save
schema
serialisables
serialisers
zip_utils
tokenizing
tokenizing
regex_impl
regex_impl
tokenizer
spacy_impl
spacy_impl
tokenizers
tokens
utils
tokenizers
tokens
trainer
utils
utils
cdb_state
cdb_utils
check_for_updates
config_utils
data_utils
defaults
download_scripts
envsnapshot
exceptions
fileutils
filters
hasher
import_utils
iterutils
legacy
legacy
conversion_all
convert_cdb
convert_config
convert_deid
convert_meta_cat
convert_rel_cat
convert_vocab
fixes
helpers
identifier
legacy_converter
v2_beta
matutils
ner
ner
data_collator
metrics
transformers_ner
postprocessing
registry
regression
regression
checking
regression_checker
results
targeting
utils
usage_monitoring
vocab_utils
version
vocab
medcat.plugins.data
Packaged resources for MedCAT plugins (e.g. curated plugin catalog).
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